Description of the Method
It is an unsupervised NMF-based (non-negative matrix factorizationn) deconvolution.
Feature selection
No feature selection
Deconvolution
The deconvolution is based on Non-negative Matrix Factorization (NMF) called by the NMF::nmf function, with the parameter method = "snmf/r".
Results
The program returns an estimated proportion matrix and the corresponding estimated cell-type specific profiles matrix.
Descriptors
Omics_type = trancriptome and methylome
Cancer_type = all
Method_type = unsupervised
Cell_type = all